- The Boy Who Sought the World - A young man stands on a beach, claiming his "world is too small". Many years later the same man, though much older returns to the island, dressed in a Black Coat carrying the body of a young boy wrapped in a white cover under his arm.
- A Voice Amidst the Waves - The man places the body of Ventus on the Paopu tree. Within his heart the boy wonders where he is when a light flashes.
- Heart to Heart - Ventus falls and lands on his Dive to the Heart though it is blank and fractured. His heart then comes into contact with a new heart which completes his Dive to the Heart pillar.
- Birth by Sleep - As Master Xehanort prepares to leave he notices Ven's arm is raised in the air and a Keyblade appears which glows and shoots a light in the air.
- The Land of Departure/Three Pupils
- The Meteor Shower - Ven is laying on his bed in his room when he notices a meteor shower happening and rushes out to see it.
- Wayfinder - Ven is laying to the ground watching the meteor shower when Aqua surprises him. Aqua presents Terra and Ven the Wayfinders she made, saying that they are good luck charms. Explaining that they represent the unbreakable bond between them.
- The Last Night - The three head back to the castle, Aqua says to herself, they will be "together... always" while looking up at the night sky. That was the last night they were together beneath the same stars.
- The Sorcerer's Apprentice - Mickey Mouse is shown in the middle of an ocean on a book, which is then swallowed up in a whirlpool. He lands in Yen Sid's study and is warned something bad is afoot.
- Mark of Mastery - Terra and Aqua are to begin the Mark of Mastery Exam. Ven is looking around and sees Master Xehanort and seems uncomfortable to see him. Master Eraqus explains the exam and what it is for. When the exam begins Master Eraqus creates orbs of light but Master Xehanort tampers with them and they act on their own. Terra and Aqua begin to destroy them when a rogue orb goes after Ven. Ven then helps Terra and Aqua destroy the orbs together.
- Eraqus Announces the Results - Aqua and Terra fight against each other, but Terra has trouble controlling his darkness. The exam ends with only Aqua gaining the title of Master. Terra wishing to be alone leaves and runs into Master Xehanort.
- Another Road - Terra and Master Xehanort converse on darkness. Master comments that darkness cannot be destroyed it can only be channeled. A bell chimes and Terra runs back inside the castle. Meanwhile Master Xehanort smiles wickedly and walks through a Corridor of Darkness.
- The Unversed Threat - Master Eraqus receives a message for his old friend Yen Sid telling him that the Princesses of Heart are in danger by the darkness as well as a new threat that feeds on negativity called the Unversed. He then send Terra and Aqua to stop this new threat and locate Master Xehanort. He also gives Terra the chance to prove that he has what it takes to be a Master. Ven is not present during this.
- Departure - Terra departs on a journey to defeat the Unversed and locate Master Xehanort who disappeared. Leaving a distraught Ventus behind.
- Enchanted Dominion/The Call of Darkness
- Another World
- Chasing the Unversed
- Maleficent
- Unlocking the Door
- Darkness Within
- Off on the Wrong Foot
- Dwarf Woodlands/The Queen's Scheme
- Who is the Fairest One of All?
- Her Heart Is Pure Light
- Back to the Castle
- The Shadows Lengthen
- A Meager Clue
- To Yen Sid's Tower
- Castle of Dreams/Escort to the Ball
- A Girl in Distress
- Bibbidi-Bobbidi-Boo
- Cinderella's Strength
- The Ball of Her Dreams
- Terra Spots the Unversed
- The Stroke of Twelve
- Reunion with Aqua
- Secret Meeting - Master Xehanort talks to someone, who smiles wickedly and walks away.
- Crossing Paths - Terra sees someone with a Keyblade, who promptly disappears using a strange star-like object.
- An Audience with Yen Sid - Terra converses with Yen Sid about the Unversed, Master Xehanort, and the Masked Boy. After he leaves Yen Sid comments on Xehanort to himself.
- Terra Hears a Voice - Terra is summoned to the Badlands by Master Xehanort.
- The Masked Boy's Identity - Master Xehanort tells Terra the identity and origins of the Masked Boy Vanitas, and how he was accidentally created in a desperate attempt to save Ventus from succumbing to darkness.
- Flashback: The Boy with No Memories - Terra has a flashback about the time he first time he and Aqua met Ventus.
- The Abomination - Master Xehanort begs Terra to help atone for his mistakes by destroying Vanitas, and is instructed to search in the Radiant Garden, where Vanitas will undoubtedly strike next.
- Radiant Garden/The Other Road
- The Unversed Appear - Terra lands in Radiant Garden and is immediately attacked by the Unversed.
- Xehanort Walks Into Town - Terra sees Master Xehanort and wonders what he is doing there.
- Lost and Found - Terra sees an old man drop a book.
- A Curious Book - Terra returns the book that Merlin the Wizard dropped. Merlin explains that the book can awaken a person's innermost abilities. Terra requests to try awakening his own abilities.
- The Giant Unversed Appears - After meeting Merlin, Terra spots a giant Unversed and follows it to the mining area.
- Brought Together - Terra, Aqua, and Ventus reunite, but their reunion is short-lived as they must battle a giant Unversed.
- Walls of the Heart - Terra, Aqua, and Ventus defeat the Unversed, but the ensuing argument forces them to go their separate ways.
- A Shady Character - Terra encounters the mysterious Braig, who claims to have captured Master Xehanort.
- Xehanort the Captive - Terra engages Braig in a tense battle to free Master Xehanort.
- What Darkness Can Do - Terra defeats Braig, scarring the latter's face in a show of anger. Master Xehanort then gives Terra the opportunity to be his pupil, claiming he shows the true Mark of Mastery as he was able to channel the darkness.
- An Eerie Farewell - Terra meets Ventus just as he's about to leave. Ventus asks to go with him, but Terra turns him down, but claims that Ventus will be there when he needs him.
- The Power to Steal Hearts - Angered greatly at the loss of his eye, Braig attempts to attack Master Xehanort, but is threatened to back down. The two then converse about Terra.
- Disney Town/The Dream Festival
- Unversed Mayhem
- Terra Becomes a Racer
- No More Bending the Rules
- The Million Dreams Award
- Servant of Darkness
- Olympus Coliseum/Stronger Than Darkness
- A Glimpse of Heroism
- The Games
- How to Conquer the Darkness
- Registration
- Plan Beta
- Final Match
- Warrior of Darkness
- The Picture of a Hero
- Deep Space/What a Friend is
- Battle in the Lanes Between
- Wrong Place, Wrong Time
- Terra the Prisoner
- Dr. Jumba's Request
- The Mightiest Creature in the Galaxy
- "When you feel it, you'll know it."
- Never Land/The Boy Who Could Fly
- Captain Hook's Predicament
- A Boy Who's After the Light?
- Peter Pan's Big Entrance
- Enemies No More
- Crisis of the Lost Boys
- The Lost Boys in Peril
- A Swarm of Unversed
- Captain Hook Returns
- Flashback: The Last Night
- Treasures All Their Own
- The Warmth of Light - Terra, on his Keyblade Glider, comments on the light being warm.
- Legacy - Terra lands on the Destiny Islands where he meets two young boys, Riku and Sora. He then chooses Riku to be his successor and inherit the Keyblade.
- Xehanort Summons Terra - Master Xehanort calls Terra to the Badlands and tells him that Ventus went to confront Master Eraqus about his past.
- A Friend's Duty - Terra saves Ventus just as Master Eraqus is about to destroy him.
- Master and Pupil Trade Blows - Terra engages Master Eraqus in a decisive battle.
- Eraqus's Demise - Just as Terra and Eraqus begin to feel remorse for their actions, Master Xehanort deals the final blow to Eraqus. He then tells Terra to meet him in the Keyblade Graveyard as he covers the Land of Departure in darkness.
- The World Collapses - Terra watches in horror as the Land of Departure is completely destroyed, and then goes to the Keyblade Graveyard to confront Master Xehanort.
- The Keyblade Graveyard/Never Let Go
- For Friendship - Terra arrives at the Keyblade Graveyard. He then claims that whatever he does, he is doing it for friendship.
- Gathering - Terra, Ventus, and Aqua prepare for the final battle with Xehanort and Vanitas.
- Kingdom Hearts - Terra, Aqua, and Ven engage in battle against Master Xehanort, and Vanitas seemingly outmatched. Master Xehanort summons a blue moon in the sky. Mickey appears shortly after. Terra confronts Master Xehanort and questions him about what he did to Ventus. A fight breaking out shortly after his explanations.
- Darkness Takes Over - While fighting Xehanort, Terra loses control of his anger, and succumbs to the darkness.
- The Last Bastion of Free Will - Terra defeats Master Xehanort, but the elderly Keyblade Master uses his Keyblade to unlock his heart and use it to possess Terra's body, creating a new, younger Xehanort. Xehanort is about to leave, but is forced to face off against Terra's discarded armor, brought to life by the young man's remaining thoughts and emotions.
- Return to Silence - Terra's Lingering Will defeats Xehanort, and kneels down, while a bright light consumes Xehanort. The blue moon shines brightly on the armor before disappearing behind clouds. Terra's voice is then heard stating that "one day he will set this right". The credits then begin to roll.
- The Boy Who Sought the World - A young man stands on a beach, claiming his "world is too small". Many years later the same man, though much older returns to the island, dressed in a Black Coat carrying the body of a young boy wrapped in a white cover under his arm.
- A Voice Amidst the Waves - The man places the body of Ventus on the Paopu tree. Within his heart the boy wonders where he is when a light flashes.
- Heart to Heart - Ventus falls and lands on his Dive to the Heart though it is blank and fractured. His heart then comes into contact with a new heart which completes his Dive to the Heart pillar.
- Birth by Sleep - As Master Xehanort prepares to leave he notices Ven's arm is raised in the air and a Keyblade appears which glows and shoots a light in the air.
- The Land of Departure/Three Pupils
- The Meteor Shower - Ven is laying on his bed in his room, when he notices a meteor shower happening and rushes out to see it.
- Wayfinder - Ven is laying to the ground watching the meteor shower when Aqua surprises him. Aqua presents Terra and Ven the Wayfinders she made, saying that they are good luck charms. Explaining that they represent the unbreakable bond between them.
- The Last Night - The three head back to the castle, Aqua says to herself, they will be "together... always" while looking up at the night sky. That was the last night they were together beneath the same stars.
- The Sorcerer's Apprentice - Mickey Mouse is shown in the middle of an ocean on a book, which is then swallowed up in a whirlpool. He lands in Yen Sid's study and is warned something bad is afoot.
- Mark of Mastery - Terra and Aqua are to begin the Mark of Mastery Exam. Ven is looking around and sees Master Xehanort and seems uncomfortable to see him. Master Eraqus explains the exam and what it is for. When the exam begins Master Eraqus creates orbs of light but Master Xehanort tampers with them and they act on their own. Terra and Aqua begin to destroy them when a rogue orb goes after Ven. Ven then helps Terra and Aqua destroy the orbs together.
- Eraqus Announces the Results - Aqua and Terra fight against each other, but Terra has trouble controlling his darkness. The exam ends with only Aqua gaining the title of Master. Terra wishing to be alone leaves. Master Xehanort is next seen talking to a Masked Boy about Ventus.
- The Masked Boy - The Masked Boy appears in Ventus's room, leaving dark hints about Terra.
- Chasing Terra - Ventus tries to give Terra a warning, but arrives too late, and chases after him.
- Dwarf Woodlands/Ven's First New World
- The Merry Seven
- Diamond Thief?
- Unwelcome
- The Little Cottage in the Woods
- A Frightened Snow White
- Who Attacked the Princess?
- The Wicked Wood Spirit
- Where Did Terra Go?
- Castle of Dreams/The Power of Believing
- A New Friend
- Cinderella Kindness
- A Dress to Fix
- Just Need a Pearl!
- Lucifer the Menace
- That's What Friends Do
- Keep On Believing
- Enchanted Dominion/A Stolen Heart
- The Sleeping Princess
- Maleficent's Barrier
- Sleeping on the Job
- Freeing the Heart of Light
- Princess Aurora's Memory
- Her Dream Came True
- Terra Stole Her Heart?
- Reunion with Aqua
- Trust
- An Invitation to Danger - While traveling the Lanes Between, Ventus encounters the Masked Boy and follows him to the Badlands.
- The Masked Boy's Keyblade - Ventus tries to get some answers out of the Masked Boy, but the boy responds by challenging him to a duel, revealing that he is a Keyblade Wielder.
- Another Keyblade Wielder - Despite Ventus's best efforts, the Masked Boy easily outmatches and nearly kills him, but Mickey comes to Ventus's aid.
- Peas in a Pod - Mickey and Ventus defeat the Masked Boy, who then leaves through a Corridor of Darkness.
- Radiant Garden/Meetings and Partings
- To the City of Light - Ven, on his Keyblade Glider, finds himself in front a new world.
- Is That Mickey? - Ven in lands in the Radiant Garden and he sees Mickey.
- The Castle Guards - Ven after following Mickey arrives in front a large Castle. He tries to enter but is stopped the two guards, Dilan and Aeleus. He then sees a large Unversed and gives chase. The guards attempt to follow, but are stopped by Even who states that their Lord wishes to see them. Even then comments about Ven.
- An Invitation to Disney Town - Ven while chasing the Unversed, sees it harassing someone and saves them. He is then approached by Scrooge McDuck who gives him three lifetime passes to Disney Town, one for him and two grown-ups.
- The Wizard and the Book - Still chasing the Unversed, Ven runs into Merlin who knows that Ven is trying awaken his abilities and tells the book is in the house.
- Brought Together - Terra, Aqua, and Ventus reunite, but their reunion is short-lived as they must battle a giant Unversed.
- Walls of the Hearts - After they defeat the Unversed, Ven gives Terra and Aqua the passes to Disney Town that he received. Ven mentions the boy in the mask and Terra says his name is Vanitas. Both Aqua and Terra tell Ven to go home, but he refuses. Terra accuses Aqua of spying under Master Eraqus's orders. Ven asks Aqua if she was 'ordered' to take him home too. When she doesn't answer, Ven chases after Terra.
- Eyes Without Fear - Ven rescues a young boy from the Unversed.
- First Connection - Ven then meets Even and the young boy, Ienzo. Ven asks about Terra, to which Even says he did see him pass by. Even goes on to say that he and Ven will meet again someday.
- An Eerie Farewell - Ven finds Terra and asks to go with him. Terra says no, but goes on to say that he knows that Ven will be there if he ever needs him soon after Terra leaves. Ven then says that he better tell Aqua.
- Another Farewell - Ven tells Aqua about Terra, who then goes to follow him again. Ven also requests to go with Aqua, but she too says no and to go home. She then leaves him behind as well.
- Flashback: The Wooden Keyblade - Ven remembers the day when Terra gave him the Wooden Keyblade. He and Terra were training together when Terra began talk his dream to be a Keyblade Master. Aqua says that he is not the only one. Terra, Aqua, and Ven all share the same dream.
- Memorized - Ven is playing around with the Wooden Keyblade when he drops it. Someone else picks it up and calls him childish for playing with a toy sword he introduces himself as Lea and his friend as Isa. Lea then challenges Ven to a fight, but loses. They all become friends afterwards.
- Disney Town/The Dream Festival
- Enter Captain Justice
- Making Ice Cream
- Who's Looking Out for Me?
- The Million Dreams Award
- Servant of Darkness
- Olympus Coliseum/What Makes a Hero
- Hero Hopefuls
- Who to Train?
- Phil Checks Up on Herc
- Reasons
- An Important Match
- To Save a Friend
- Future Heroes
- A Giant Unversed Closes In
- The Unversed Stows Away
- Experiment 626 Escapes
- A Friendly Creature
- The Broken "Circle"
- Friendly No More
- More Than an Object
- Hyperdrive
- Never Land/In Search of a Shooting Star
- The "Star" Falls
- Caught Unawares - While exploring Neverland, Mickey has an unpleasant encounter with Vanitas.
- The Hunt Begins
- Pirate Treasure Is Way More Fun
- Tinker Bell Is Pixie-napped
- A Familiar Twinkle
- Flashback: The Last Night
- To Mermaid Lagoon!
- The Long Tom
- The Jaws of Danger?
- Keepsakes
- Two Very Worried Friends - Ven lands at the Mysterious Tower with with the Star Shard. Donald and Goofy, who were sitting on the stairs, mistake him for King Mickey. The two then take Ven to Yen Sid.
- Finding Mickey - Ven meets Yen Sid and explains how he ended up with the Star Shard. Yen Sid locates Mickey who is shown to be injured and weak. Ven then volunteers to bring Mickey back safe to the Tower.
- Former Master - Ven lands at the Badlands to find Mickey and rescue, only to run into Master Xehanort. He then has visions of himself and Master Xehanort realizing what he had lost at the hands of Xehanort. Xehanort then commands Ven to fight Vanitas to forge the ultimate key, the χ-blade.
- Seeking the Truth - Ven is floating in the Lanes Between conflicted about what Master Eraqus was hiding from him.
- Homecoming - Ven returns to the Land of Departure to confront Eraqus, who touches the scar on his face. The scene then fades to white.
- Flashback: The Keyblade Masters - Master Eraqus talks with Master Xehanort about his obsession with finding the χ-blade. Master Xehanort then proceeds to tell him about his plans to explore the legend of the Keyblade War. Eraqus tries to stop him but is defeated and has his face scarred by Xehanort.
- Master & Pupil Trade Blows - Eraqus then tries to destroy Ven when Terra appears and saves him. Eraqus then begins to fight Terra, who sends Ven to the Lanes Between in his desperation to keep him safe.
- "I'm not fighting." - Ventus lands on the Destiny Islands, and encounters Vanitas, who commands the boy to join with him to complete the χ-blade.
- Flashback: Vanitas's Making - Ven remembers the day Vanitas was created, and how he lost part of his heart due to Master Xehanort wanting him to create the χ-blade.
- A Reason to Fight - Vanitas then states that he will make Ven fight and tells him to go to the Keyblade Graveyard. There Vanitas says, that Ven will see him choke the lives out of Terra and Aqua. Ven, thinking about his friends, follows Vanitas.
- The Keyblade Graveyard/Hearts Rejoined
- Friends Forever - Ven arrives at the Keyblade Graveyard and grasps his Keyblade saying they will be "friends forever".
- Gathering - Terra, Ventus, and Aqua prepare for the final battle with Xehanort and Vanitas.
- Kingdom Hearts - Terra, Aqua, and Ven engage in battle against Master Xehanort, and Vanitas seemingly outmatched. Master Xehanort summons a blue moon in the sky. Mickey appears shortly after. Braig then appears and tells Aqua and Ven Master Xehanort's plans for Terra. Aqua battles Braig and defeats him, only to be struck down by Vanitas who attempts to destroy her heart. Ven regains his movement after being frozen and fights him to protect Aqua.
- The χ-blade's Forging - After he is defeated the first time, Vanitas reveals not only his face to Ven, but that he is the source of all Unversed. He then transports them both to a Dive to the Heart.
- Unfinished Union - Ven awakens on a Dive to the Heart pillar that features both himself and Vanitas. Vanitas then floats down wielding the incomplete χ-blade stating their union was not complete and that Ven should join with him so that it may be complete. Ven says he will destroy them both but, Vanitas says that he will destroy himself as well. Ven says it doesn't matter as long as he can save his friends.
- The Fractured Heart's Return - Ven finally defeats Vanitas in battle, destroying both him and the χ-blade. He then lands on his finished Dive to the Heart pillar regaining the part of his heart that was lost. His body then bursts into light and his heart floats away
- Sleep Well, Heart - Ven and Aqua, both in their armor, float in the Lanes Between when Mickey comes and rescues them. The scene changes to Ven falling, reminiscent to the beginning of the game and says that the warmth of the light is from the young heart he had joined with. The credits then begin to roll.
- The Boy Who Sought the World - A young man stands on a beach, claiming his "world is too small". Many years later the same man, though much older returns to the island, dressed in a Black Coat carrying the body of a young boy wrapped in a white cover under his arm.
- A Voice Amidst the Waves - The man places the body of Ventus on the Paopu tree. Within his heart the boy wonders where he is when a light flashes.
- Heart to Heart - Ventus falls and lands on his Dive to the Heart, though it is blank and fractured. His heart then comes into contact with a new heart which completes his Dive to the Heart pillar.
- Birth by Sleep - As Master Xehanort prepares to leave he notices Ven's arm is raised in the air and a Keyblade appears which glows and shoots a light in the air.
- The Land of Departure/Three Pupils
- The Meteor Shower - Ven is laying on his bed in his room when he notices a meteor shower happening and rushes out to see it.
- Wayfinder - Ven is laying to the ground watching the meteor shower when Aqua surprises him. Aqua presents Terra and Ven the Wayfinders she made, saying that they are good luck charms. Explaining that they represent the unbreakable bond between them.
- The Last Night - The three head back to the castle, Aqua says to herself, they will be "together... always" while looking up at the night sky. That was the last night they were together beneath the same stars.
- The Sorcerer's Apprentice - Mickey Mouse is shown in the middle of an ocean on a book, which is then swallowed up in a whirlpool. He lands in Yen Sid's study and is warned something bad is afoot.
- Mark of Mastery - Terra and Aqua are to begin the Mark of Mastery Exam. Ven is looking around and sees Master Xehanort and seems uncomfortable to see him. Master Eraqus explains the exam and what it is for. When the exam begins Master Eraqus creates orbs of light but Master Xehanort tampers with them and they act on their own. Terra and Aqua begin to destroy them when a rogue orb goes after Ven. Ven then helps Terra and Aqua destroy the orbs together.
- Eraqus Announces the Results - Aqua and Terra fight against each other, but Terra has trouble controlling his darkness. The exam ends with only Aqua gaining the title of Master. Terra wishing to be alone leaves. Aqua stays behind as instructed, until they were interrupted by Master Yen Sid.
- The Unversed Threat - Master Eraqus receives a message for his old friend Yen Sid telling him that the Princesses of Heart are in danger by the darkness as well as a new threat that feeds on negativity called the Unversed. He then send Terra and Aqua to stop this new threat and locate Master Xehanort. He also gives Terra the chance to prove that he has what it takes to be a Master. Eraqus also requests that Aqua keep an eye on Terra and to make sure he does not fall prey to the darkness. Ven is not present during this.
- Departure - Aqua witnesses Terra's departure and unsuccessfully tries to stop Ven from following him. Master Eraqus then orders her to bring Ven back to the Land of Departure.
- Castle of Dreams/The Glass Slipper
- Reunion with Terra
- Something Very Wrong
- A Lesson from the Fairy Godmother
- The Magic Words
- Mouse and Key
- Get That Key to Cinderella
- A Perfect Fit
- The Grand Duke Runs for Help
- Overtaken by Darkness
- A Pure Heart Filled with Light
- Dwarf Woodlands/The Waking Journey
- The Witch and the Apple
- Seven Sad Dwarfs
- The Prince's Resolve
- Presence within the Mirror
- The Trail Goes Cold
- Love's First Kiss
- Flashback: Ventus Wakes Up
- The Happy Send-off
- 'Enchanted Dominion/Dark Footsteps
- Forbidden Mountain
- Reunion with Ventus
- The Captive Prince
- Ambushed
- A Castle Wrapped in Thorns
- The Sword of Truth Finds Its Mark
- True Love
- Radiant Garden/A Sign of Light
- In Search of Terra
- A Well-Mannered Lass
- Kairi
- Magic to Keep Kairi Safe
- Stop the Giant Unversed
- Brought Together - Terra, Aqua, and Ventus reunite, but their reunion is short-lived as they must battle a giant Unversed.
- Walls of the Heart
- A Curious Book
- The Boy in the Mask Appears
- A Reluctant Farewell
- Disney Town/The Dream Festival
- Captain Useless
- Aqua is Number One
- The Million Dreams Award
- Servant of Darkness
- Olympus Coliseum/The Road Heroes Tread
- "Herc, they're all yours!"
- Terra the Champ
- A Life Terra Saved
- Friendship Between Boys
- Bluebird
- Hades' Backup
- The "Snow Cone" Gets Licked
- Advice for a Hero
- Deep Space/Signs of a Heart
- Teeming with Trouble
- A Wayfinder?
- The Grand Councilwoman
- Experiment 626's Search
- A Friend of Terra's?
- Space Find
- The Final Directive
- Gantu's Rage
- A New Circle
- Never Land/The Expatition
- The Treasure Map
- Enter Captain Hook
- A Tricky Ascent
- Hook's Ambush
- Vanitas Returns
- A Hard-Won Victory
- Flashback: The Last Night
- Some Things Can't Be Broken
- The Warmth of Light - Aqua, on her Keyblade Glider, follows the light.
- Sora and Riku - Aqua sees the tree with Paopu fruit and looks at her Wayfinder, thinking about Terra and Ven. She then meets two boys, named Sora and Riku. She then asks Sora to stay with and keep Riku safe if he ever walks down a dark path alone.
- Mickey in the Lanes Between - While traveling through the Lanes Between Aqua comes across Mickey. He says the name Master Yen Sid and Aqua promises to take Mickey to him.
- Grave News - Aqua arrives at the Mysterious Tower, only to learn that Master Eraqus has been struck down. He then says that Master Xehanort and Terra are the ones responsible. Yen Sid tells her Terra is at the Keyblade Graveyard and to be careful.
- Unwavering Friendship - Aqua leaves the Tower and hopes that Ven and Terra are safe, also that she will find a way to "get them out of this".
- The Keyblade Graveyard/Unbreakable Ties
- Always One - Aqua arrives at the Keyblade Graveyard and grasps her Keyblade saying that the three of them "will always be one".
- Gathering - Terra, Ventus, and Aqua prepare for the final battle with Xehanort and Vanitas.
- Kingdom Hearts - Terra, Aqua, and Ven engage in battle against Master Xehanort, and Vanitas seemingly outmatched. Master Xehanort summons a blue moon in the sky. Mickey appears shortly after. Ven and Aqua are confronted by Braig. Braig stating that Master Xehanort's plans are to make Terra succumb to the darkness, angering Aqua who rushes towards him.
- Ventus-Vanitas - After Aqua defeats Braig, Vanitas strikes Aqua down. She then wakes with Mickey standing next to her and no sign of Ven. She rushes to Ven but his heart was taken over by Vanitas and he attack her with the completed χ-blade. She and Mickey then engage in battle against Vanitas.
- The χ-blade Goes Berserk - Aqua takes out her Wayfinder and wishes Terra and Ven to lend her their power. Her Keyblade then glows and she rushes at Ventus-Vanitas and destroys the χ-blade which then goes berserk. Aqua, Ven, and Mickey disappear in a flash of light released by the χ-blade.
- Three Lights - Aqua awakens at the Mysterious Tower, in Yen Sid's study. He proceeds to tell her how she and Ven got there and how there was no sign of Terra. She finds out that Ven's heart is sleeping and will not wake until it returns. Yen Sid tells her Ven does not need protection, but a friend that believes in him. Aqua says she knows how to find Terra. The credits then begin to roll.
- Ventus's Guidance - Aqua states that Ven needs a safe place to stay. She is surprised when Ven summons his Keyblade and opens a corridor.
- Home Is Where the Hurt Is - The corridor leads to the Land of Departure. Aqua is shocked and saddened to see her home is destroyed. She then finds Master Eraqus's Keyblade.
- Castle Oblivion - Aqua remembers what Eraqus told her if anything were to happen to him to lock the world away. Using his Keyblade she begins the process of changing the world into one that only she knows.
- The Chamber of Waking - When Aqua finishes the world is transformed and Ven is sitting in a chamber. She apologizes, for it will be lonely for Ven, but safe.
- Terra's Guidance - Aqua then leaves the Castle to find Terra.
- "Return my friend's hearts!" - Aqua is led to the Radiant Garden where she finds a man that looks like Terra, who then tries to strangle her. The man then says that Terra's heart was extinguished by the darkness within him and strikes at her. Aqua, for the first time refers to herself as Master Aqua, commands the man to give back her friends heart.
- The Heart That Fought Back - Aqua defeats Terra-Xehanort, when Terra's heart begins to fight back. Terra then stabs himself with his Keyblade and sinks in to the darkness, Aqua jumps in after him.
- With You - Aqua, trying to save Terra, sacrifices her armor and Keyblade and traps her in the Realm of Darkness. She promises Ven she will be there to wake him up.
- Where the Heart Goes - Sora and Riku are shown looking up at the stars when they begin to go home, Riku notices something wrong with Sora. He's crying and feels very sad, but doesn't know why. Riku says that someone must be very sad and is waiting for Sora to reach out and help them. Sora doesn't understand, but tries anyway. Sora's heart then calls out to Ven's. The scene changes to Radiant Garden where Braig is leading Ansem the Wise and Dilan to a young man that remembers nothing, save for his name... Xehanort. Aqua's armor and Keyblade are brought as well. The scene changes again, to Aqua who is shown wandering through the Realm of Darkness wielding Master Eraqus's Keyblade. She is soon surrounded by Darkside Heartless and almost gives up, when she is saved by Ven and Terra's Keyblades. She remembers all the friends she made on her journey and with her resolve strengthened, she says there is always a way. The end credits begin to roll and "Simple and Clean" plays. After the credits end, Sora appears on his own Dive to the Heart pillar and reaches out to Ven's heart, allowing Ven to stay within his heart until he is ready.
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